Signature	SharedGeneNum	SharedGenes	AvgPval	ColonC_M2 Chr17q11-12,21-25_UniqueNum	ColonC_M2 Chr17q11-12,21-25_pVal	ColonC_M2 Chr17q11-12,21-25_Unique	ColonC_M18 Chr3_UniqueNum	ColonC_M18 Chr3_pVal	ColonC_M18 Chr3_Unique
Glutamine_starve_down	0		0.000132931960213	16	9.61864897061e-05	ACLY|EIF4A3|FASN|MRPL12|NME1|NMT1|PHB|PSMB3|PSMD3|PSMD11|PSMD12|SRSF1|SYNGR2|TUBG1|UTP18|ZNF207	12	0.00016967743072	ATR|CDC25A|DNTTIP2|EIF2B5|EXOSC7|GMPS|IFRD2|MRPL3|MYD88|RRP9|SMARCC1|UMPS
Human Breast_Turner10_324genes (20101236-SuppTable7a)	0		5.96988225069e-06	27	2.93988617866e-13	ACACA|BIRC5|DDX52|DUS1L|EIF4A3|FAM104A|FN3KRP|GPS1|MAFG|MRPL38|MRPL45|MRPL58|NARF|NUP85|PEX12|PGS1|PSMB3|PSMD3|RMND5B|RPL23|SAP30BP|SLC39A11|SRP68|SUMO2|TBCD|TRIM37|TUBD1	13	1.19397642074e-05	DNAJC19|DYNC1LI1|LSG1|NGLY1|PARL|POLR2H|RFC4|SS18L2|TATDN2|THOC7|THUMPD3|TOPBP1|UMPS
MARTENS_TRETINOIN_RESPONSE_DN	0		3.08004402632e-07	33	6.15313796517e-07	BIRC5|COASY|CSNK1D|DCXR|ERAL1|HNRNPDL|HSD17B8|IFT20|KRT10|LINC02210|METTL23|MIF4GD|MLX|MRM1|MRPL12|MRPS7|NF1|NLE1|NME1-NME2|NT5C|OXLD1|PEX12|PIGW|PSME3|RPL23|SRSF1|SRSF7|STRADA|SUPT4H1|SYNGR2|TEFM|TLCD1|TMUB2	30	6.95008747411e-10	APEH|ATG3|CYB561D2|DNAJC19|EEF1B2|GTPBP8|HYAL3|IMPDH2|JAGN1|MAGEF1|NDUFAF3|NGLY1|PDHB|POLR2L|RBM15B|RFC4|RPL15|RPL29|RPS4X|RPS10|RPS23|SMARCC1|SMIM4|SNORA63|SNORD19B|SPRYD4|SS18L2|THUMPD3|TRMT10C|UMPS
Mouse Lymphoma_Wu08_1167genes (18535662-TableS2d)	0		0.000423258297205	23	0.000620575805779	AATF|BIRC5|BLMH|BRCA1|CCDC43|DUS1L|EFTUD2|FASN|FTSJ3|HNRNPDL|JMJD6|KAT2A|MRPL12|MYO19|NUP85|SMARCE1|SPAG5|SRSF7|TK1|TOP2A|TRIM37|USP36|WRB	18	0.000225940788631	BAP1|DCP1A|DHX30|EIF2A|EXOSC7|GFM1|GMPS|IFRD2|IMPDH2|MRPL47|MRPS22|NDUFAF3|SHQ1|SMARCC1|TKT|TOMM70|TRMT10C|UMPS
PENG_GLUTAMINE_DEPRIVATION_DN	0		5.79650138302e-06	19	6.43847222491e-06	ACLY|CENPX|CYB561|DCAF7|EIF4A3|FASN|MRPL12|NME1|NMT1|PHB|PSMB3|PSMD3|PSMD11|PSMD12|SRSF1|SYNGR2|TUBG1|UTP18|ZNF207	15	5.15453054113e-06	ATR|CDC25A|DHX30|DNTTIP2|EIF2B5|EXOSC7|GMPS|IFRD2|MRPL3|MYD88|PSMD6|RRP9|SMARCC1|U2SURP|UMPS
Ribosomal protein	0		0.000221255187877	9	0.000428255786535	MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58|MRPS7|MRPS23|RPL23	9	1.42545892185e-05	MRPL3|MRPL47|MRPS22|MRPS25|RPL15|RPL29|RPS4X|RPS10|RPS23
cellular amide metabolic process [GoID:GO:0043603; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|IPI|ISS|NAS|TAS]	0		0.000451727167765	30	0.000901764123509	AARSD1|ACACA|BECN1|CASC3|COA3|DHFR2|EIF4A3|ERAL1|ERBB2|FASN|FSHB|MIF4GD|MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58|MRPS7|MRPS23|NPEPPS|NUP85|POLG2|RPL23|RPS6KB1|SLC46A1|STAT3|STAT5B|TACO1|UNK	28	1.69021202071e-06	APEH|CCDC12|CNOT10|DPH3|ECE2|EEF1B2|EIF1B|EIF2A|EIF2B5|GFM1|GPX1|LARS2|LIMD1|MRPL3|MRPL47|MRPS22|MRPS25|NIT2|POLR2H|POLR2L|PRKCD|RPL15|RPL29|RPS4X|RPS10|RPS23|SPCS1|TRMT10C
cellular macromolecule catabolic process [GoID:GO:0044265; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|IPI|ISS|NAS|TAS]	0		0.000537289906198	32	0.000474568128393	ANAPC11|AP2B1|CASC3|CCDC47|CDC27|CSNK1D|DHX34|EIF4A3|KCTD2|KPNB1|MVB12B|NPLOC4|NT5C3B|PSMB3|PSMC5|PSMD3|PSMD11|PSMD12|PSME3|RMND5B|RPL23|SDF2|SMG8|SNF8|SPOP|SUMO2|TLK2|TNFAIP1|TOM1L1|UBE2Z|USP36|VPS25	23	0.000600011684003	ARIH2|BAP1|CNOT10|DCP1A|EXOSC7|FHIT|GPX1|KCTD6|LSM3|MYD88|NGLY1|PDE12|PRKCD|PSMD6|RPL15|RPL29|RPS4X|RPS10|RPS23|SMARCC1|TATDN2|USP4|USP19
intracellular ribonucleoprotein complex [GoID:GO:0030529; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0		4.79746279872e-05	30	1.52965757598e-05	BRCA1|CASC3|DHX8|DHX40|EFTUD2|EIF4A3|FTSJ3|JMJD6|MCRIP1|MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58|MRPS7|MRPS23|NLE1|NSRP1|NUFIP2|RPL23|RPTOR|SRP68|SRSF1|TEFM|TOP2A|UNK|UTP6|UTP18|ZMAT5	21	8.06526802146e-05	CMSS1|DCP1A|DHX30|EIF2A|ISY1|LIMD1|LSM3|MRPL3|MRPL47|MRPS22|MRPS25|RPL15|RPL29|RPP14|RPS4X|RPS10|RPS23|RRP9|RUVBL1|TRMT10C|WDR3
mRNA metabolic process [GoID:GO:0016071; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	0		0.000116928738802	27	0.000225626463307	CASC3|CDK11B|DHX8|DHX34|DHX40|EFTUD2|EIF4A3|JMJD6|MED1|NSRP1|NT5C3B|PSMB3|PSMC5|PSMD3|PSMD11|PSMD12|PSME3|RBM11|RPL23|SMG8|SRSF1|SRSF7|STAT3|SUPT4H1|SUPT6H|TSEN54|ZMAT5	23	8.23101429689e-06	CNOT10|DCP1A|EXOSC7|ISY1|LSM3|MYD88|PDE12|POLR2H|POLR2L|PPP4R2|PRKCD|PSMD6|RBM15B|RPL15|RPL29|RPS4X|RPS10|RPS23|RPUSD3|THOC7|TRMT10C|U2SURP|USP4
mitochondrial envelope [GoID:GO:0005740; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0		0.000478986178458	30	6.41730710799e-06	ATP5G1|ATP5H|BECN1|CHCHD5|COA3|COASY|COX11|DHFR2|ERAL1|HSD17B8|MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58|MRPS7|MRPS23|MYO19|NME1|PGS1|PHB|RHOT1|RPS6KB1|SFXN4|SLC25A10|SLC25A19|SLC25A39|STAT3|TMEM14A	18	0.000951555049808	CHCHD4|CHCHD6|CPOX|DNAJC19|MRPL3|MRPL47|MRPS22|MRPS25|NDUFAF3|NDUFB5|PARL|QTRT2|SLC25A20|SLC25A26|SLC25A38|TIMMDC1|TOMM70|UQCRC1
mitochondrial gene expression [GoID:GO:0140053; evidenceTypes:IBA|IDA|IEA|IMP|ISS|TAS]	0		0.00042050170502	12	4.62179985488e-06	COA3|ERAL1|MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58|MRPS7|MRPS23|POLG2|TEFM	7	0.000836381610186	GFM1|LARS2|MRPL3|MRPL47|MRPS22|MRPS25|TRMT10C
mitochondrial inner membrane [GoID:GO:0005743; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0		0.000172253951875	21	8.1709094081e-05	ATP5G1|ATP5H|COA3|COX11|DHFR2|ERAL1|MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58|MRPS7|MRPS23|PGS1|PHB|SFXN4|SLC25A10|SLC25A19|SLC25A39|STAT3	15	0.000262798809669	CHCHD6|CPOX|DNAJC19|MRPL3|MRPL47|MRPS22|MRPS25|NDUFAF3|NDUFB5|PARL|SLC25A20|SLC25A26|SLC25A38|TIMMDC1|UQCRC1
mitochondrial part [GoID:GO:0044429; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0		1.37605027124e-05	36	1.627975856e-05	ATP5G1|ATP5H|BECN1|CHCHD5|COA3|COASY|COX11|DHFR2|ERAL1|HSD17B8|LRRC59|MRM1|MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58|MRPS7|MRPS23|MYO19|NME1|PGS1|PHB|POLDIP2|POLG2|PYCR1|RHOT1|RPS6KB1|SFXN4|SLC25A10|SLC25A19|SLC25A39|STAT3|TEFM|TMEM14A	27	1.12412468648e-05	ALAS1|CHCHD4|CHCHD6|CPOX|DHX30|DNAJC19|GFM1|GPX1|LARS2|MRPL3|MRPL47|MRPS22|MRPS25|NDUFAF3|NDUFB5|PARL|PDE12|PDHB|QTRT2|RPUSD3|SLC25A20|SLC25A26|SLC25A38|TIMMDC1|TOMM70|TRMT10C|UQCRC1
mitochondrial translation [GoID:GO:0032543; evidenceTypes:IBA|IDA|IEA|IMP|ISS|TAS]	0		0.00022100835562	11	9.22878041049e-06	COA3|ERAL1|MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58|MRPS7|MRPS23|POLG2	7	0.000432787930829	GFM1|LARS2|MRPL3|MRPL47|MRPS22|MRPS25|TRMT10C
mitochondrial transport [GoID:GO:0006839; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	0		0.000459052854863	16	0.000125548455639	ACACA|ATP5G1|ATP5H|DYNLL2|KAT2A|NMT1|NPEPPS|PHB|RHOT1|SLC25A10|SLC25A19|SLC25A39|STARD3|STAT3|TMEM14A|USP36	11	0.000792557254086	ACTL6A|ARIH2|BAP1|CHCHD4|DNAJC19|PARL|RUVBL1|SLC25A20|SLC25A26|SLC25A38|TOMM70
organelle inner membrane [GoID:GO:0019866; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0		0.000584654491333	21	0.000358931336274	ATP5G1|ATP5H|COA3|COX11|DHFR2|ERAL1|MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58|MRPS7|MRPS23|PGS1|PHB|SFXN4|SLC25A10|SLC25A19|SLC25A39|STAT3	15	0.000810377646391	CHCHD6|CPOX|DNAJC19|MRPL3|MRPL47|MRPS22|MRPS25|NDUFAF3|NDUFB5|PARL|SLC25A20|SLC25A26|SLC25A38|TIMMDC1|UQCRC1
protein deubiquitination [GoID:GO:0016579; evidenceTypes:IBA|IC|IDA|IEA|IMP|ISS|TAS]	0		0.000117992817131	15	5.83505980728e-05	ATXN7L3|BECN1|BRCA1|FOXK2|HGS|KAT2A|PSMB3|PSMC5|PSMD3|PSMD11|PSMD12|PSME3|RHOT1|RNF135|USP36	11	0.000177635036189	ACTL6A|ACTR8|BAP1|CDC25A|PSMD6|RNF123|RUVBL1|TADA3|USP4|USP19|WDR48
protein modification by small protein removal [GoID:GO:0070646; evidenceTypes:IBA|IC|IDA|IEA|IMP|ISS|TAS]	0		2.32959245795e-05	16	3.14858147616e-05	ATXN7L3|BECN1|BRCA1|FOXK2|GPS1|HGS|KAT2A|PSMB3|PSMC5|PSMD3|PSMD11|PSMD12|PSME3|RHOT1|RNF135|USP36	13	1.51060343974e-05	ACTL6A|ACTR8|BAP1|CDC25A|COPS7B|PSMD6|RNF123|RUVBL1|SENP5|TADA3|USP4|USP19|WDR48
ribonucleoprotein complex [GoID:GO:1990904; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0		5.10034330406e-05	30	1.65412725577e-05	BRCA1|CASC3|DHX8|DHX40|EFTUD2|EIF4A3|FTSJ3|JMJD6|MCRIP1|MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58|MRPS7|MRPS23|NLE1|NSRP1|NUFIP2|RPL23|RPTOR|SRP68|SRSF1|TEFM|TOP2A|UNK|UTP6|UTP18|ZMAT5	21	8.54655935235e-05	CMSS1|DCP1A|DHX30|EIF2A|ISY1|LIMD1|LSM3|MRPL3|MRPL47|MRPS22|MRPS25|RPL15|RPL29|RPP14|RPS4X|RPS10|RPS23|RRP9|RUVBL1|TRMT10C|WDR3
ribosome [GoID:GO:0005840; evidenceTypes:IBA|IDA|IEA|ISS|NAS|TAS]	0		6.40803019763e-05	12	8.85117843369e-05	MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58|MRPS7|MRPS23|NLE1|NUFIP2|RPL23|SRP68	10	3.96488196158e-05	EIF2A|MRPL3|MRPL47|MRPS22|MRPS25|RPL15|RPL29|RPS4X|RPS10|RPS23
ribosome biogenesis [GoID:GO:0042254; evidenceTypes:EXP|IBA|IC|IDA|IEA|IMP|ISS|NAS|TAS]	0		0.000203370611089	14	0.000403604534269	AATF|CSNK1D|DDX52|EIF4A3|ERAL1|FTSJ3|MRM1|MRPL10|MRPS7|NLE1|NOL11|RPL23|UTP6|UTP18	14	3.13668790881e-06	DHX30|EIF2A|EXOSC7|LSG1|RIOX2|RPL15|RPL29|RPP14|RPS4X|RPS10|RPS23|RRP9|SHQ1|WDR3
translational elongation [GoID:GO:0006414; evidenceTypes:IBA|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	0		0.000243225562704	10	5.36631945799e-05	EIF4A3|ERAL1|MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58|MRPS7|MRPS23	7	0.000432787930829	DPH3|EEF1B2|GFM1|MRPL3|MRPL47|MRPS22|MRPS25
